How to use SteMClass

  1. Upload the sample's pair of IDAT files (Red and Green).
  2. Enter the Sample ID
  3. Select the Array version (450K, EPICv1, or EPICv2).
  4. Alternatively, click "Import an example from GEO Repository" to load publicly available test data (GSE308134).
  5. Click "Preprocess Data" to prepare the sample.
  6. Click "Run Classification" to classify the sample.
  7. After classification, explore the data visualisation tabs to inspect the sample's DNA methylation profile (heatmaps) and its position relative to the training data (UMAP).
  8. Click "New Analysis" to start over.

UMAP Visualization